Cytosim  PI
Cytoskeleton Simulator
Parameters of Play

Variables

int frame
 index of displayed frame in trajectory file
 
int dir
 direction of replay { -1, 0, 1 }
 
unsigned int loop
 if true, jump to first frame after last frame
 
unsigned int period
 number of simulation steps between consecutive displays More...
 
unsigned int delay
 number of milli-seconds between refresh
 
unsigned int style
 style of display { 1, 2, 3 } More...
 
std::string report
 specifies information displayed near the bottom left corner of window
 
char magic_key [NB_MAGIC_KEYS]
 associate a piece of custom code to a key More...
 
std::string image_format
 format of exported images [gif, png, ppm]
 
std::string image_dir
 directory where images are exported
 

Detailed Description

Variable Documentation

char magic_key[NB_MAGIC_KEYS]

Example:

% define magic key 1 to delete fibers:
set simul:display *
{
magic_key1 = m, ( delete 10 fiber microtubule )
magic_key2 = C, ( cut fiber * { plane = 1 0 0, 0 } )
label = (Press 'm' to delete fibers!)
}

up to 4 keys (magic_key0, magic_key1 ... 3) can be defined.

unsigned int period

if period==2, only every other frame will be displayed

unsigned int style

3 styles are implemented:

  • style 1 used OpenGL lines and points. It is suitable for 2D work.
  • style 2 is a faster display, also suitable for 2D.
  • style 3 draw real tubes and uses OpenGL lighting for rendering. It is nice for 3D.